研究人才詳細資料
出版年月
著作類別
著作名稱
作者
收錄出處
2023-12
期刊論文
Correcting modification-mediated errors in nanopore sequencing by nucleotide demodification and reference-based correction
Chiou, C.-S., Chen, B.-H., Wang, Y.-W., Kuo, N.-T., Chang, C.-H., Huang, Y.-T.
Communications Biology
2023-09
期刊論文
Comparative genomics identified PenR E151V substitution associated with carbapenem-resistance Burkholderia cepacia complex and a novel Burkholderia cepacia complex specific OXA-1043 subgroup
Liao, Y.-C., Huang, Y.-T.§, Tseng, C.-H., Liu, C.-W., Liu, P.-Y.
Infection and Drug Resistance
2023-06
期刊論文
Identification of combinatorial mutations associated with colistin resistance in Shewanella algae
Huang, Y.-T., Mao, Y.-C., Tseng, C.-H., Liu, C.-W., Liu, P.-Y.
Microbes Infection
2023-05
期刊論文
Identification of Cutibacterium modestum in spondylitis by metagenomics analysis
Huang, Y.-T., Yang, M.-Y., Mao, Y.-C., Lee, D.Y., KUO, Y.-L., Tseng, C.-H., Liu, C.-W., Fu, Y.-C., and Liu, P.-Y.
In Vivo
2023-04
期刊論文
Clinical metagenomics-assisted diagnosis of relapsed HIV-associated cryptococcal meningitis
Yeh, T.-K., Lin, K.-P., Chuang, Y.-C., Wang, L.-A., Chen, C.-J., Lee, D.-Y., Huang, Y.-T.*, Liu, Po-Yu
International Journal of STD & AIDS
2023-03
期刊論文
Insight into the Mechanisms of Carbapenem Resistance in Klebsiella pneumoniae: A study on IS26 integrons, beta-Lactamases, porin modifications, and plasmidome analysis
Tseng, C-H., Huang, Y.-T., Mao, Y.-C., Lai, C.-H., Yeh, T.-K., Ho, C.-M. and Liu, P.-Y.
Antibiotics
2023-01
期刊論文
Diagnosis of Legionnaires’ Disease assisted by next-generation sequencing in a patient with COVID-19
Huang, P.-H., Huang, Y.-T., Lee, P.-H., Tseng, C.-H., Liu, P.-Y. and Liu, C.-W.
Infection and Drug Resistance
2022-12
期刊論文
Evolution of trimethoprim/sulfamethoxazole resistance in Shewanella algae from the perspective of comparative genomics and global phylogenic analysis
Liu, C.-W., Cheng, J.-F., Tung, K.-C., Hong, Y.-K., Lin, J.-H., Lin, Y.-H., Tsai, C.-A., Lin, S.-P., Chen, Y.-C., Shi, Z.-Y., Huang, Y.-T., Liu, P.-Y.
Journal of Microbiology, Immunology and Infection
2022-07
期刊論文
Metagenomic Sequencing and Histology on a Chronic Wound Identified Epstein-Barr Virus-Associated Lymphoma
Yang, W.-T., Chiang, I., Tseng, C.-H., Cheng, C., Lin, J.-H., Liu, P.-Y., and Huang, Y.-T.
Evolutionary Bioinformatics
2022-04
期刊論文
Comparative genomics revealed fluoroquinolone resistance determinants and OmpF deletion in carbapenem-resistant Escherichia coli
Yang, W.-T., Chiu, I.-J, Huang, Y.-T., Liu, P.-Y.
Frontiers in Microbiology
2022-02
期刊論文
LongPhase: an ultra-fast chromosome-scale phasing algorithm for small and large variants
Lin, J.-H., Chen, L.-C., Yu, S.-C., Huang, Y.-T.
Bioinformatics
2022-01
期刊論文
COVID-19 associated bacteremia with Chryseobacterium indologenes co-harboring blaIND-2, blaCIA and blaCcrA
Yeh, T.-K. Li, Z.-H., Huang, Y.-T., Liu, P.-Y.
Infection and Drug Resistance
2021-07
期刊論文
Genomics of Ochrobactrum pseudogrignonense (newly Brucella pseudogrignonense) reveals a new blaoxa subgroup
Li, S.-Y., Huang, Y.-E., Chen, J.-Y., Lai, C.-H., Mao, Y.-C., Huang, Y.-T., Liu, P.-Y.
Microbial Genomics
2021-05
期刊論文
IKKε isoform switching governs immune response against EV71 infection
Chang, Y.-L., Liao, Y.-W., Chen, M.-H., Chang, S.-Y., Huang, Y.-T., Ho, B.-C., S.-L. Yu.
Nature Communications Biology
2021-04
期刊論文
Arthrobacter woluwensis Bacteremia: a clinical-genomic investigation
Li, S.-Y., Kao, C.-C., Hu, Y.-C., Lai, C.-H., Jiang, Y.-P., Mao, Y.-C., Huang, Y.-T.*, Liu, P.-Y.
Pathogens
2021-04
期刊論文
Shewanella algae and Morganella morganii coinfection in cobra-bite wound: a genomic analysis
Huang, W.-H., Kao, C.-C., Mao, Y.-C., Lai, C.-S., Lai, K.-L., Lai, C.-H., Tseng, C.-H., Huang, Y.-T.*, Liu, P.-Y.
Life
2021-03
期刊論文
Genome analysis of Enterobacter hormaechei identified ISEcp1 in association with blaCTX-M-236, a new blaCTX-M variant located in both chromosome and plasmid
Huang, Y.-T., Yeh, T.-K., Chen, W.-H., Shih, P.-W., Mao, Y.-C., Lu, M.-C., Chen, C.-M., P.-Y. Liu
Journal of Global Antimicrobial Resistance
2021-03
期刊論文
Homopolish: a method for removal of systematic errors in Nanopore sequencing by homologous polishing
Huang, Y.-T.*, Liu, P.-Y., and Shih, P.-W.
Genome Biology
2021-02
期刊論文
Elizabethkingia intra-abdominal infection and related Trimethoprim Sulfamethoxazole resistance: a clinical-genomic study
Tseng, L.-C., Wang, J.-M., Lu, H.-Y., Mao, Y.-C., Lai, K.-L., Tseng, C.-H., Huang, Y.-T.*, Liu, P.-Y.
Antibiotics
2020-09
期刊論文
Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
Chen, Y.-J., He, G.-C., Cheng, J.-F., Lee, Y.-T., Hung, Y.-H., Chen, W.-H., Huang, Y.-T.*, Liu, P.-Y.
Comparative Immunology, Microbiology and Infectious Diseases
2020-05
期刊論文
Detection of S83V GyrA mutation in quinolone-resistant Shewanella algae using comparative genomics
Tseng, C.-H., Cheng, J.-F., Chen. S.-Y., Chen, W.-H., Shi, Z.-Y., Lin, Y.-H., Tsai, C.-A., Lin, S.-P., Chen, Y.-C., Lin, Y.-C., Huang, Y.-T.*, Liu, P-Y.
Journal of Microbiology, Immunology and Infection
2020-03
期刊論文
Comparative Genomics Reveals Pathogenicity-Related Loci in Shewanella algae
Wang, J.-H., He, G.-C., Huang, Y.-T.*, and P-Y Liu
Canadian Journal of Infectious Diseases and Medical Microbiology
2019-06
期刊論文
Genome Sequence of colistin-resistant bacteremic Shewanella algae carrying the beta-lactamase gene blaOXA-55
Chen, Y.-J., Tung, K.-C., Hong, Y.-K., Chen, S.-Y., Huang, Y.-T.*, and Po-Yu Liu.
Canadian Journal of Infectious Diseases and Medical Microbiology
2019-04
期刊論文
Genomic and phylogenetic characterization of Shewanella xiamenensis isolated from giant grouper (Epinephelus lanceolatus) in Taiwan
Huang, Y.-T., Cheng, J.-F., Wu, Z.-Y., Tung, K.-C., Chen, Y.-J., Hong, Y.-K., Chen, S.-Y., Liu, P.-Y.
Zoonoses and Public Health
2019-03
期刊論文
Complex microbiome in brain abscess revealed by whole-genome culture-independent and culture-based sequencing
Lin, J.-H., Wu, Z.-Y., Gong, L., Wong, C.-H., Chao, W.-C., Yen, C.-M., Wang, C.-P., Wei, C.-L., Huang, Y.-T., Liu, P.-Y.
Journal of Clinical Medicine
2019-01
期刊論文
Reversal of Carbapenem-Resistance in Shewanella algae by CRISPR/Cas9 Genome Editing
Wu, Z.-Y., Huang, Y.-T. Chao, W.-C., Ho, S.-P., Cheng, J.-F., Liu, P.-Y.
Journal of Advanced Research
2018-12
期刊論文
Whole-genome characterization of Shewanella algae strain SYT3 isolated from seawater reveal insight into hemolysis
Wu, Z.-Y., Ho, S.-P., Cheng, J.-F., Tung, K.-C., Hong, Y.-K., Chen, S.-Y., Chen, Y.-J., Huang, Y.-T.*, Liu, P.-Y.
Future Microbiology
2018-10
期刊論文
Genomic characterization of carbapenem-resistant Shewanella algae isolated from Asian hard clam (Meretrix lusoria)
Lee, Y.-H. Tung, K.-C., Cheng, J.F., Wu, Z.-Y., Chen, S.-Y., Hong, Y.-K., Huang, Y.-T.*, Liu., P.-Y.
Aquaculture
2018-09
期刊論文
Genome characterization of bile-isolated Shewanella algae ACCC: an insight into bile salt adaption
Tseng, S.Y., Tung, K.-C., Cheng, J.F., Lee, Y.-H., Wu, Z.-Y., Hong, Y.-K., Chen, S.-Y., Huang, Y.-T.*, Liu, P.-Y.
Gut Pathogens
2018-08
期刊論文
Comparative genomics reveals diverse capsular polysaccharide synthesis gene clusters in emerging Raoultella planticola
Huang, Y.-T., Chuang, W.-Y., Ho, B.-C., Wu, Z.-Y., Kuo, R., Ko M., Liu, P-Y.
Memórias do Instituto Oswaldo Cruz
2018-07
期刊論文
Draft genome sequence of carbapenem-resistant Shewanella algae strain AC isolated from small abalone (Haliotis diversicolor)
Huang, Y.-T., Cheng, J.-F., Chen, S.-Y., Hong, Y.-K., Wu, Z.-Y., Liu, P-Y.
Journal of Global Antimicrobial Resistance
2018-05
期刊論文
Genome sequencing and comparative analysis of Stenotrophomonas acidaminiphila reveal evolutionary insights into sulfamethoxazole resistance
Huang, Y.-T., Chen, C.-M., Ho, B.-C., Wu, Z-Y., Kuo, C., Liu, P.-Y.
Frontiers in Microbiology
2018-04
期刊論文
Genome analysis of multidrug-resistant Shewanella algae isolated from human soft tissue sample
Huang, Y.-T., Tang, Y.-Y., Cheng, J.-F., Wu, Z-Y., Mao, Y.-C., Liu, P.-Y.
Frontiers in Pharmacology
2018-01
期刊論文
Culture-independent analysis of liver abscess using Nanopore sequencing
Gong, L., Huang, Y.-T., Wong, C.-H., Chao, W.-C., Wu, Z.-Y., Wei, C.-L., Liu, P.-Y.
PLOS One
2017-12
期刊論文
An efficient error correction algorithm using FM-index
Huang, Y.-T. and Huang, Y.-W.
BMC Bioinformatics
2017-11
期刊論文
Genome-based analysis of virulence determinants of a Serratia marcescens strain from soft tissues following a snake bite
Huang, Y.-T., Cheng, F.-J., Liu, Y.-T., Mao, Y.V., Wu, M.-S, Liu, P.-Y.
Future Microbiology
2017-04
期刊論文
Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids
Lin C.-S., Chen, J.W.; Chiu, C.-C., Hsiao, C.W., Yang, C.-J., Jin, X., Leebens-Mack, J., dePamphilis, C., Huang, Y.-T. Yang, L.-H., Chang, W.-J., Kui, L., Wong, G., Hu, J.-M., Wang, W. Shih M.-C.
The Plant Journal
2016-12
期刊論文
A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing
Ting, C.-K., Lin, C.-S., Chan, M.-T., Chen, J.W., Chuang, S.-T., Huang, Y.-T.*
PLOS One
2016-08
期刊論文
Epigenetic silencing of the NR4A3 tumor suppressor, by aberrant JAK/STAT signaling, predicts prognosis in gastric cancer
Yeh C.M., Chang L.Y., Lin S.H., Chou J.L., Hsieh H.Y., Zeng L.H., Chuang S.Y., Wang H.W., Dittner C., Lin C.Y., Lin J.M., Huang Y.T., Ng E.K., Cheng A.S., Wu S.F., Lin J., Yeh K.T., Chan M.W.
Scientific Report
2016-01
期刊論文
Integration of string and de Bruijn graphs for genome assembly
Huang, Y.-T. * and Liao, C.-F.
Bioinformatics
2016-01
期刊論文
Transcriptome-wide analysis of the MADS-box gene family in
the orchid Erycina pusilla.
Lin C.-S., Hsu C.-T., Liao D.-C., Chang W.--J., Chou M.L., Huang Y.-T., Chen J.-W., Ko S.-S., Chan M.-T., Shih M.-C.
Plant Biotechnology
2015-04
期刊論文
NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss.
Ruhlman, T., Chang, W.-T., Chen, J.-W., Huang, Y.-T., Chan MT, Zhang J, Liao DC, Blazier JC, Jin X, Shih MC, Jansen RK, Lin C.
BMC Plant Biology
2015-03
期刊論文
The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family
Lin, C.-C. §, Chen, J-W. §, Huang, Y.-T. §, et al.
Scientific Report
2014-05
期刊論文
BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues- De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development
Shih, M.C, Chou, Mi.L., Yue, J.J., Hsu, C-T, Chang, W.-J., Ko, S.-S., Liao, D.-C., Huang, Y.-T., Chen, J.W., Yuan, J.L., Gu, X.P., and Lin, C.S.
BMC Plant Biology
2014-
期刊論文
Modulation of alternative splicing by expression of small nuclear ribonucleoprotein polypeptide N
Moon-Sing Lee, Yu-Shan Lin, Yi-Fang Deng, Wan-Ting Hsu, Chiung-Chun Shen, Yi-Hsin Cheng, Yao-Ting Huang and Chin Li
The FEBS Journal
2013-09
期刊論文
A Novel Framework for the Identification and Analysis of Duplicons between Human and Chimpanzee
Chuang, T.-J., Wu, S.-Z. Huang, Y.-T.*
BioMed Research International
2013-06
期刊論文
Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families
Lin, C.-S., Chen, J.-W., Huang, Y.-T., et al.
Plant Molecular Biology
2013-05
期刊論文
Draft Genome Sequence of the Serratia marcescens Strain VGH107, a Taiwan Clinical isolate,
Liu, P.-Y., Huang, Y.-T., et al.
Genome Announcements
2013-04
期刊論文
Global Transcriptome Analysis and Identification of a CONSTANS-Like Gene Family in the Orchid Erycina pusill
Chou, M-L, Shih, M.-C., Chan, M.-T., Liao, S.-Y., Hsu, C-T., Haung, Y.-T., et al.,
Planta
2012-12
期刊論文
New Insight into Transcription of Human Endogenous Retroviral Elements
Pačes J., Huang Y.-T., Pačes V., Rídl, J.and Chang C.-M.
New Biotechnology
2012-
期刊論文
LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs
Wang M.-C., Chen F.-C., Chen Y.-Z., Huang Y.-T., Chuang T.-J.q
BMC Research Notes
2011-05
期刊論文
Inference of Chromosome-Specific Copy Numbers Using Population Haplotypes
Huang, Y.-T.* and Wu, M.-H.
BMC Bioinformatics
2011-05
期刊論文
The Extent of Linkage Disequilibrium and Computational Challenges of Single Nucleotide Polymorphisms in Genome-Wide Association Studies
Huang, Y.-T.*, Chang, C-J., and Chao, K.-M.
Current Drug Metabolism
2010-10
期刊論文
Multi-objective tag SNPs selection using evolutionary algorithms
Ting, C.-K., Chen, F.-C., Huang, Y.-T.*
Bioinformatics
2010-05
期刊論文
Computational Approaches for the Discovery and Analysis of Structural Variations
Huang, Y.-T.*, Chuang, S.-Y., Lin K.-H., Li Y.-D., and Wang S.-W.
International Journal of Systems and Synthetic Biology
2008-05
期刊論文
A new framework for the selection of tag SNPs using multimarker haplotypes
Huang Y.-T. and Chao, K.-M.
Journal of Biomedical Informatics
2008-05
期刊論文
Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
Huang Y.-T., Chen, F.-C., Chen, C.-J., Chen, H.-L., and Chuang, T.-J.
Genome Research
2007-03
期刊論文
PGAA: a plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species EST conservation from seven plant species
Chen, F.-C., Wang, S.-S., Chaw, S.-M., Huang Y.-T., and Chuang, T.-J.
Plant Physiology
2006-01
期刊論文
A greedier approach for finding tag SNPs
Chang, C.J., Huang, Y.-T., and Chao, K.-M.
Bioinformatics
2005-12
期刊論文
An approximation algorithm for haplotype inference by maximum parsimony
Huang, Y.-T., Chao, K.-M., and Chen, T.
Journal of Computational Biology
2005-11
期刊論文
Selecting additional tag SNPs for tolerating missing data in genotyping
Huang, Y.-T., Zhang, K., Chen, T., and Chao, K.-M.
BMC Bioinformatics
2004-11
期刊論文
Design and implementation of a wireless Internet remote access platform
Lai, Y.-C., Lin, Phone and Huang, Y.-T.
Wireless Communications and Mobile Computing
2004-09
研討會論文
Approximation algorithms for the selection of robust tag SNPs
Huang, Y.T., Zhang, K., Chen, T. and Chao, K.M.
主要學歷